{ "_id": "6ad881af0d12c08e591ba07f", "Package": "MSCsimtester", "Type": "Package", "Title": "Tests of Multispecies Coalescent Gene Tree Simulator Output", "Version": "1.2", "Authors@R": "c(\nperson(\"Elizabeth\", \"Allman\", email = \"e.allman@alaska.edu\", role = c(\"aut\", \"cre\", \"cph\")),\nperson(\"Hector\", \"Banos\", email = \"hbassnos@gmail.com\", role = c(\"aut\", \"cph\")),\nperson(\"John\", \"Rhodes\", email = \"j.rhodes@alaska.edu\", role = c(\"aut\", \"cph\")))", "Maintainer": "Elizabeth Allman ", "Description": "Statistical tests for validating multispecies coalescent\ngene tree simulators, using pairwise distances and rooted\ntriple counts. See Allman ES, Baños HD, Rhodes JA 2023. Testing\nmultispecies coalescent simulators using summary statistics,\nIEEE/ACM Trans Comput Biol Bioinformat, 20(2):1613–1618.\n.", "License": "MIT + file LICENSE", "RdMacros": "Rdpack", "Encoding": "UTF-8", "Config/roxygen2/version": "8.1.0", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-21 09:06:12 UTC", "User": "root" }, "Author": "Elizabeth Allman [aut, cre, cph], Hector Banos [aut, cph], John\nRhodes [aut, cph]", "Repository": "https://eallman.r-universe.dev", "Date/Publication": "2026-08-22 02:50:02 UTC", "RemoteUrl": "https://github.com/cran/MSCsimtester", "RemoteRef": "HEAD", "RemoteSha": "b859fc40468a0ec74079f0ecdab4d3bdceca5aef", "_user": "eallman", "_type": "src", "_file": "MSCsimtester_1.2.tar.gz", "_fileid": "https://r2.ropensci.org/5a149378e7249fabe6bbb7938c0584221d698ecd5866e2911a31b4e41710a2fc", "_filesize": 732124, "_sha256": "5a149378e7249fabe6bbb7938c0584221d698ecd5866e2911a31b4e41710a2fc", "_expires": "2027-01-29T09:11:09.000Z", "_created": "2026-10-21T09:06:12.000Z", "_published": "2026-10-21T09:11:11.414Z", "_buildurl": "https://github.com/r-universe/eallman/actions/runs/39573964226", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 119136170779, "time": 90, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12333566554" }, { "job": 119136170781, "time": 97, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12333008769" }, { "job": 119136170776, "time": 127, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "12333027562" }, { "job": 119136170897, "time": 261, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "12333791686" }, { "job": 119134886519, "time": 177, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12334035457" }, { "job": 119136170794, "time": 77, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12334100474" }, { "job": 119136170772, "time": 51, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12333521738" }, { "job": 119136170974, "time": 65, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "12333502015" }, { "job": 119136170990, "time": 62, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12334290476" } ], "_upstream": "https://github.com/cran/MSCsimtester", "_commit": { "id": "b859fc40468a0ec74079f0ecdab4d3bdceca5aef", "author": "Elizabeth Allman ", "committer": "cran-robot ", "message": "version 1.2\n", "time": 1787367002 }, "_maintainer": { "name": "Elizabeth Allman", "email": "e.allman@alaska.edu", "login": "eallman", "description": "", "uuid": 20730864 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10", "role": "Depends" }, { "package": "ape", "version": ">= 5.0", "role": "Depends" }, { "package": "Rdpack", "role": "Imports" }, { "package": "kSamples", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "methods", "role": "Imports" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-34", "n": 1 } ], "_tags": [ { "name": "1.2", "date": "2026-08-22" } ], "_stars": 0, "_contributors": [ { "user": "eallman", "count": 4, "uuid": 20730864 } ], "_userbio": { "uuid": 20730864, "type": "user", "name": "Elizabeth S Allman", "followers": 4 }, "_downloads": { "count": 304, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/MSCsimtester" }, "_searchresults": 1, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/MSCsimtester.html", "extra/NEWS.html", "extra/NEWS.txt", "LICENSE" ], "_realowner": "eallman", "_cranurl": false, "_releases": [ { "version": "0.0.9", "date": "2021-11-04" }, { "version": "1.0.0", "date": "2021-12-15" }, { "version": "1.1", "date": "2025-06-02" }, { "version": "1.2", "date": "2026-08-22" } ], "_exports": [ "ADtest", "pairwiseDist", "plotEdgeOrder", "plotPops", "rootedTriple" ], "_help": [ { "page": "MSCsimtester-package", "title": "Validity tests of simulators of the multspecies coalescent model in phylogenomics.", "topics": [ "MSCsimtester-package", "MSCsimtester" ] }, { "page": "ADtest", "title": "Anderson-Darling test comparing sample and theoretical pairwise distance distributions.", "topics": [ "ADtest" ] }, { "page": "genetreeSample", "title": "Simulated gene tree dataset.", "topics": [ "genetreeSample" ] }, { "page": "pairwiseDist", "title": "Compute and plot sample and theoretical pairwise distance densities.", "topics": [ "pairwiseDist" ] }, { "page": "plotEdgeOrder", "title": "Plot species tree, with edge numbers on edges.", "topics": [ "plotEdgeOrder" ] }, { "page": "plotPops", "title": "Plot species tree, with population sizes on edges.", "topics": [ "plotPops" ] }, { "page": "print.ADtestOutput", "title": "Print function for objects of class 'ADtestOutput'.", "topics": [ "print.ADtestOutput" ] }, { "page": "print.rootedTripleOutput", "title": "Print function for objects of class 'rootedTripleOutput'.", "topics": [ "print.rootedTripleOutput" ] }, { "page": "rootedTriple", "title": "Compare expected and sample frequencies of topological rooted triples.", "topics": [ "rootedTriple" ] } ], "_rundeps": [ "ape", "digest", "kSamples", "lattice", "nlme", "rbibutils", "Rcpp", "Rdpack", "SuppDists" ], "_score": 1, "_indexed": true, "_nocasepkg": "mscsimtester", "_universes": [ "eallman" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.2", "date": "2026-10-21T09:07:46.000Z", "distro": "resolute", "commit": "b859fc40468a0ec74079f0ecdab4d3bdceca5aef", "fileid": "https://r2.ropensci.org/4e050a708ba55d3030245124963aa00634ffefd7eb50039c00fc1dbd67f2dd9f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/eallman/actions/runs/39573964226" }, { "r": "4.6.1", "os": "linux", "version": "1.2", "date": "2026-10-21T09:07:50.000Z", "distro": "resolute", "commit": "b859fc40468a0ec74079f0ecdab4d3bdceca5aef", "fileid": "https://r2.ropensci.org/6d3028a54acc91769879ff97e84360c6d7acf3cd7e469bdf9081a69d8776325e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/eallman/actions/runs/39573964226" }, { "r": "4.5.3", "os": "mac", "version": "1.2", "date": "2026-10-21T09:08:05.000Z", "commit": "b859fc40468a0ec74079f0ecdab4d3bdceca5aef", "fileid": "https://r2.ropensci.org/7489eb3a20492d83ffcf1a933f7dd5d9de7f7b71ebaea7aa0620c00270223197", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/eallman/actions/runs/39573964226" }, { "r": "4.6.1", "os": "mac", "version": "1.2", "date": "2026-10-21T09:09:10.000Z", "commit": "b859fc40468a0ec74079f0ecdab4d3bdceca5aef", "fileid": "https://r2.ropensci.org/13f03ad250209e473159647468e71c0bfd83e26eb4445ce7a83020320d01074a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/eallman/actions/runs/39573964226" }, { "r": "4.6.0", "os": "wasm", "version": "1.2", "date": "2026-10-21T09:07:47.000Z", "commit": "b859fc40468a0ec74079f0ecdab4d3bdceca5aef", "fileid": "https://r2.ropensci.org/2c76eec1eb831c4c6f359fb050a445818d4035c90ebc6daa32d1a6fe726ac386", "status": "success", "buildurl": "https://github.com/r-universe/eallman/actions/runs/39573964226" }, { "r": "4.7.0", "os": "win", "version": "1.2", "date": "2026-10-21T09:07:07.000Z", "commit": "b859fc40468a0ec74079f0ecdab4d3bdceca5aef", "fileid": "https://r2.ropensci.org/ac0de7656c21f712906702934e230123b2909dc4578a2ab51d939513fdc08b37", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/eallman/actions/runs/39573964226" }, { "r": "4.5.3", "os": "win", "version": "1.2", "date": "2026-10-21T09:07:18.000Z", "commit": "b859fc40468a0ec74079f0ecdab4d3bdceca5aef", "fileid": "https://r2.ropensci.org/a36dd61df4da5d3890bceb1f59f3cfb03bae2d1f3c1703f9829ba2e4afd0d4aa", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/eallman/actions/runs/39573964226" }, { "r": "4.6.1", "os": "win", "version": "1.2", "date": "2026-10-21T09:07:13.000Z", "commit": "b859fc40468a0ec74079f0ecdab4d3bdceca5aef", "fileid": "https://r2.ropensci.org/ff988f650c73bcf6c0cbe8ce29dab1b7e5ed086449df16a3c795298e299cc334", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/eallman/actions/runs/39573964226" } ] }